Use the 568B on both ends of the cable. Most all modern networking equipment will handle the cross over issue.
In the olden days you had to reverse the Tx - Rx pair,
I strongly suggest that you follow the standard color PIN patterns so that if someone has to trouble shot your network they don't freak out when looking at your PIN pattern.
I also suggest that you look at the crimpers and RJ45 fittings manufactured by Platimum Tools. This combination will allow you to much more quickly terminate your cables and even more importantly end up with cables that pass data at high speed,